All functions

box_make()

Create a bounding box

dir_change()

Change array directions

dummy_cubes()

Build dummy cubes

dummy_ontology()

Build dummy ontology

find_holes()

Find holes

ontology_plot()

Plot the ontology graph

outline_draw()

Draw maximum outline

poly_build()

Build a polygon

poly_fill()

Fill a polygon with points

poly_make()

Make polygon

poly_set_make()

Make polygon sets

poly_smooth()

Smooth polygon sets

seg_assay_add()

Assay setter

seg_citation_add()

Citation setter

seg_draw()

Draw segmentation

seg_feature_complex_plot()

Plot numeric data on a segmentation from a complex assay

seg_feature_plot()

Plot numeric data on a segmentation

seg_get_slice()

Get a specific slice from a segmentation

seg_mesh_build()

Build a structure mesh

seg_meshlist_add()

Add mesh list to a segmentation

seg_meshlist_render()

Render meshes from a segmentation

seg_plot()

Plot slices from a segmentation

seg_projection_add()

Create a maximum projection

seg_projection_plot()

Plot a projection from a segmentation

seg_projection_remove()

Remove a projection from a segmentation

seg_select_str()

Get a set of indices according to the ontology

seg_slice_check()

Check slices

seg_sub_str()

Subset by structures

slice_make()

Make slices